G.I. Joe (2001) 1-13 + G.I. Joe: Frontline (2002) 1-4

• G.I. Joe 14-15 + G.I. Joe: Frontline 5-8
• G.I. Joe 16-19 + G.I. Joe: Frontline 9-10
• G.I. Joe 20-21 + G.I. Joe: Frontline 11-14
• G.I. Joe 22-25 + G.I. Joe: Frontline 15-18

G.I. Joe: Master & Apprentice (2004) 1-4

• G.I. Joe: Master & Apprentice 2 (2005) 1-4

G.I. Joe vs. The Transformers (2003) 1-6

• G.I. Joe vs. The Transformers II (2004) 0-4
• G.I. Joe vs. The Transformers III: The Art of War (2006) 1-5
• G.I. Joe vs. The Transformers IV: Black Horizon (2007) 1-2

Transformers/G.I. Joe (2003) 1-6

• [One Shot] Transformers/G.I. Joe: Divided Front (2004)

G.I. Joe Reloaded (2004) 1-14

[One Shot] G.I. Joe: The Hunt for Cobra Commander (2006)

G.I. Joe (2005) 0-4

Snake Eyes: Declassified (2005) 1-6

• [One Shot] Scarlett: Declassified (2006)
• G.I. Joe: Declassified (2006) 1-3
• Dreadnoks: Declassified (2006) 1-3

G.I. Joe 5-7

[One Shot] G.I. Joe Special Missions: Manhattan (2006)

G.I. Joe 8-15

[One Shot] G.I. Joe Special Missions: Tokyo (2006)

G.I. Joe 16-18

[One Shot] G.I. Joe Special Missions: Antarctica (2006)

G.I. Joe 19-24

[One Shot] G.I. Joe Special Missions: Brazil (2007)

Storm Shadow (2007) 1-7

G.I. Joe 25-27

[One Shot] G.I. Joe Special Missions: The Enemy (2007)

G.I. Joe 28-36